Analysis service closed

We regret to inform users that due to the small number of requests and the obsolescence
of the pipeline, this service will be no longer available starting from now.

If you are still interested in using CAST,
please contact us at the following email address: superc@cineca.it







 
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CAST:Chip-Seq Analysis System Tool

About this project

Recent progress in massively parallel sequencing platforms has allowed for genome-wide measurements of DNA-associated proteins using a combination of chromatin immunoprecipitation and sequencing (ChIP-seq).

protein binding chipseq analysis

While a variety of methods exist for analysis of the established microarray alternative (ChIP-chip), few approaches have been described for processing ChIP-seq data.
To fill this gap, we propose an analysis pipeline specifically designed to detect protein binding positions with high accuracy.

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